Topology Independent Comparison of Biomolecular 3D Structures

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Structure Alignment 1 of 4d8j and 1ysaABCD

Structure Overlap
RMSD
Fragment Score
Topology Score
# CA , C3' atoms of 4d8j
# CA , C3' atoms of 1ysaABCD
Match Size
#Identical Residues
#Identical Residues with Heuristics
72.29%
2.02
0.95
0.55
1339
83
60
18
19

CLICK Alignment

                        10        20                           10                              10        20                     10        20       
4d8j       84B:AE-HQHTRK--KS--ID---L--EFI:99B      3N:CGTG--ACATTGTCACGAA:19N      1M:TTCGTGACAATGTCA-C-GA:18M     66A:LVNRMKQTIRARRKRHFNAE-H:86A  
1ysaABCD  228C:A-A---LKRARNTEAA-RRSRARKLQ:248C    23B:ACT-GGAT-GAGTCATAGG:39B      3A:CCTATGACTCATCC-A-GTT:20A    230D:L-KRARNTEAARRSRARKLQRM:250D 

Alignment 1 in PIR format Matched residue pairs 1 Superimposed structures 1

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