Topology Independent Comparison of Biomolecular 3D Structures

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Structure Alignment 1 of 1mdy and 1ysaABCD

Structure Overlap
RMSD
Fragment Score
Topology Score
# CA , C3' atoms of 1mdy
# CA , C3' atoms of 1ysaABCD
Match Size
#Identical Residues
#Identical Residues with Heuristics
61.45%
1.64
0.92
0.69
310
83
51
14
14

CLICK Alignment

                                             10                     10        20                          10        20       
1mdy        5E:CAGCTGTT:12E     17F:AACAGCTGTT:26F    112A:KA-A-TMR-E-R---RRLSKV-NEA:128A   107B:NADRRKAATMRERRRLSKVNEA:128B 
1ysaABCD    7A:TGACTCAT:14A     28B:ATGAGTCATA:37B    231D:K-R-A-R-N-TEAARRSRA-RKL-Q:248D   228C:AALKRARNTEAARRSRARKLQR:249C 

Alignment 1 in PIR format Matched residue pairs 1 Superimposed structures 1

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