Topology Independent Comparison of Biomolecular 3D Structures

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Structure Alignment 1 of 3veb and 1ysaABCD

Structure Overlap
RMSD
Fragment Score
Topology Score
# CA , C3' atoms of 3veb
# CA , C3' atoms of 1ysaABCD
Match Size
#Identical Residues
#Identical Residues with Heuristics
77.11%
1.78
0.94
0.53
328
83
64
20
20

CLICK Alignment

                        10        20                                          10                          10                                                             
3veb       80B:ATRMKQTIRARRKRHFNAE-H:99B    105B:KSI--DL:109B     2N:CGTGACATTGTCACG:16N      2M:CGTGACAATGTC:13M     93A:RHFNA:97A    103A:RK-K:105A   109A:LE-F-L:112A 
1ysaABCD  230D:LKRARNTEAARRSRARKLQRM:250D   243C:RSRRAAE:237C     5A:TATGACTCATCCAGT:19A     24B:CTGGAT-GAGTC:34B    231C:K--LA:229C   233C:ARNT:236C   244C:A-RKLQ:248C 

Alignment 1 in PIR format Matched residue pairs 1 Superimposed structures 1

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