Topology Independent Comparison of Biomolecular 3D Structures

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Structure Alignment 1 of 1am9 and 1ysaABCD

Structure Overlap
RMSD
Fragment Score
Topology Score
# CA , C3' atoms of 1am9
# CA , C3' atoms of 1ysaABCD
Match Size
#Identical Residues
#Identical Residues with Heuristics
91.57%
1.78
0.96
0.81
389
83
76
21
21

CLICK Alignment

                        10                             10                          10        20                       10        20     
1am9       18F:CATGAGATCACCCCACTG:35F     41G:GCAGTGGGGTGATCT:55G    321A:RGEKRTAHNAIEKRYRSSINDK:342A   323B:EKRTAHNAIEKRYRSSINDK:342B 
1ysaABCD   22B:AACTGGATGAGTCATAGG:39B      3A:CCTA-TGACTCATCC:16A    228C:AALKRARNTEAARRSRARKLQR:249C   230D:LKRARNTEAARRSRARKL-Q:248D 

Alignment 1 in PIR format Matched residue pairs 1 Superimposed structures 1

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