Topology Independent Comparison of Biomolecular 3D Structures

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Structure Alignment 1 of 3a5t and 1ysaABCD

Structure Overlap
RMSD
Fragment Score
Topology Score
# CA , C3' atoms of 3a5t
# CA , C3' atoms of 1ysaABCD
Match Size
#Identical Residues
#Identical Residues with Heuristics
84.34%
1.39
1.00
0.41
210
83
70
23
23

CLICK Alignment

                        10        20                      10        20                         10                          10           
3a5t       56A:RRTLKNRGYAASCRVKRVTQK:76A     54B:Q-RRRT-LKNRGYAASCRVKRVTQ:75B      1C:CTGATGAGTCAGCAC:15C      1D:G-TGCTGACTCATCAG:15D  
1ysaABCD  230D:LKRARNTEAARRSRARKLQRM:250D   228C:AALK-RAR-NTEAARRSRARKLQR:249C     3A:CCTATGACTCATCCA:17A     25B:TGG-ATGAGTCATAGG:39B  

Alignment 1 in PIR format Matched residue pairs 1 Superimposed structures 1

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