Analysis, comparison, visualization of contact residues & interfacial waters of antibody-antigen structures/models

Introduction

Methods

Examples

Structure Analysis

Structure Comparison

Browse PDB Structures

References

Contacts

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  • Nguyen,M.N., Verma,C.S., and Zhong, P. (2019) AppA: a web server for analysis, comparison, and visualization of contact residues and interfacial waters of antibody–antigen structures and models. Nucleic Acids Res., doi:10.1093/nar/gkz358

  • Nguyen,M.N., Pradhan,M.R., Verma,C.S., and Zhong, P. (2017) The interfacial character of antibody paratopes: analysis of antibody-antigen structures. Bioinformatics., doi: https://doi.org/10.1093/bioinformatics/btx389

  • Nguyen,M.N., Tan,K.P., and Madhusudhan,M.S. (2011) CLICK - Topology independent comparison of biomolecular 3D structures. Nucleic Acids Res., doi:10.1093/nar/gkr393

  • Nguyen,M.N. and Madhusudhan,M.S. (2011) Biological insights from topology independent comparison of protein 3D structures. Nucleic Acids Res., doi:10.1093/nar/gkr348