Comparison of RNA 3D Structures

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Structure Alignment of 1t4l and 2nue (Note: If JSmol does not show the alignment, please refresh this page by F5)

Structure Overlap
RMSD
Fragment Score
Topology Score
#CA, C3' atoms of 1t4l
#CA, C3' atoms of 2nue
Match Size
#Identical Residues
#Identical Residues with Heuristics
56.56%
2.60
0.87
0.85
122
486
69
5
5

Alignment

                    10                      10                      10        20                      10        20        30        40        50         
1t4l    1A:GGGAUACCAUG:11A     22A:CGUGGUAUCUC:32A    375B:YS-L-I-GYASL-RL-HYVTV:390B   399B:NS-IVECRVGDGTVL-GTGVGRN-IKIAGIRA-AENA-LR-D-K-KMLDFYAKQ:444B 
2nue   29C:UGGCCUUGCGC:39C      8C:GCGCAAGGUCA:18C    159A:I-T-Q-K--RW-KE-RPEYRL:172A   184A:F-IVEAKIK---E-YRTLGEGKSKKEAEQRAAEE--LIK-L-L-E--E--S--E:221A 

Alignment in PIR format Matched residue pairs Superimposed structures

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Structure Alignment of 1t4l and 2nue (Note: If JSmol does not show the alignment, please refresh this page by F5)

Structure Overlap
RMSD
Fragment Score
Topology Score
#CA, C3' atoms of 1t4l
#CA, C3' atoms of 2nue
Match Size
#Identical Residues
#Identical Residues with Heuristics
18.03%
2.46
0.82
0.50
122
486
22
2
3

Alignment

                                    10                                                                   
1t4l   14A:CAG:16A    364B:GS---LDM-NAKRQLYS:376B   430B:NAL---RDK:435B   446B:AAIP:449B   451B:SES:453B 
2nue   40C:UUG:42C    142A:AIKEGRV-K---K---D:151A    71A:KA-YLIS-E:77A    198B:EG-L:196B   212B:EEA:210B 

Alignment in PIR format Matched residue pairs Superimposed structures

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