Comparison of RNA 3D Structures

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35 pairwise alignments of 5S, 16S, and 23S ribosomal subunits


The comparison of the structure overlap values of Rclick against CLICK (white triangle), SETTER (yellow square), and R3D Align (magenta triangle) on 35 pairwise alignments of ribosomal subunits (5S, 16S, and 23S) from R3D Align server (http://rna.bgsu.edu/main/r3dalign-help/gallery-of-featured-alignments/). Ribosomal subunits in this dataset have between 117 and 3308 nucleotide residues.



The comparison of performances of Rclick against CLICK, SETER, and R3D Align on the 35 pairwise alignments of 5S, 16S, and 23S ribosomal subunits using average structure overlap (SO) and root mean square deviation (RMSD) scores.


1275 RNA pair-wise alignments of NR95-HR dataset


The comparison of the structure overlap values of Rclick against SARA (cyan triangle) and ARTS (red diamond) over 1275 pair-wise alignments of RNA structures from NR95-HR dataset. This subset contained alignments between 51 RNA structures each having between 19 and 157 nucleotide residues (http://structure.biofold.org/sara/pages/datasets/NR95-HR.txt).



The comparison of performances of Rclick against SARA, ARTS, and CLICK on the 1275 RNA pairwise alignments of NR95-HR dataset using average structure overlap (SO) and RMSD scores.


55 difficult pairwise alignments from NR95-HR dataset


The comparison of the structure overlap values of Rclick against SARA (cyan triangle), ARTS (red diamond), CLICK (white triangle), SETTER (yellow square), and R3D Align (magenta triangle) on 55 difficult pairwise alignments from NR95-HR dataset with 30% < Structure Overlap (SO) < 70% and RMSD>2.5Å



The comparison of performances of Rclick against SARA, ARTS, CLICK, SETTER, R3D Align on 55 difficult pairwise alignments from NR95-HR dataset using average structure overlap (SO) and RMSD.


87571 RNA pairwise alignments FSCOR dataset


The comparison of performances of Rclick against SARA and CLICK on the 87571 RNA pairwise alignments from SARA server using average SO and RMSD. This subset contained alignments between 419 RNA structures (http://structure.biofold.org/sara/pages/datasets/FSCOR.txt) each having between 11 and 2774 nucleotide residues.

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